IL_6ZVK_027

3D structure

PDB id

6ZVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

GUUAAAA*UC

Length

9 nucleotides

Bulged bases

6ZVK|1|K3|A|668

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZVK_027 not in the Motif Atlas

Geometric match to IL_1R3E_001

Geometric discrepancy: 0.1845

The information below is about IL_1R3E_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_05670.1

Basepair signature

cWW-cWW

Number of instances in this motif group

9

Unit IDs

6ZVK|1|K3|G|665
6ZVK|1|K3|U|666
6ZVK|1|K3|U|667
6ZVK|1|K3|A|668
6ZVK|1|K3|A|669
6ZVK|1|K3|A|670
6ZVK|1|K3|A|671
*
6ZVK|1|K3|U|1161
6ZVK|1|K3|C|1162

Current chains

Chain K3

18S RIBOSOMAL RNA

Nearby chains

Chain O3

40S RIBOSOMAL PROTEIN ES26

Chain T3

Ribosomal protein S23