IL_6ZVK_037
3D structure
- PDB id
- 6ZVK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.49 Å
Loop
- Sequence
- GAAAAAAUU*ACCGCAGC
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZVK_037 not in the Motif Atlas
- Geometric match to IL_4V88_425
- Geometric discrepancy: 0.271
- The information below is about IL_4V88_425
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_53064.1
- Basepair signature
- cWW-cWW-L-R-L-R-L-R-L-R-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
6ZVK|1|K3|G|807
6ZVK|1|K3|A|808
6ZVK|1|K3|A|809
6ZVK|1|K3|A|810
6ZVK|1|K3|A|811
6ZVK|1|K3|A|812
6ZVK|1|K3|A|813
6ZVK|1|K3|U|814
6ZVK|1|K3|U|815
*
6ZVK|1|K3|A|849
6ZVK|1|K3|C|850
6ZVK|1|K3|C|851
6ZVK|1|K3|G|852
6ZVK|1|K3|C|853
6ZVK|1|K3|A|854
6ZVK|1|K3|G|855
6ZVK|1|K3|C|856
Current chains
- Chain K3
- 18S RIBOSOMAL RNA
Nearby chains
- Chain G3
- Ribosomal protein S11
- Chain J5
- Ribosomal protein S15a
- Chain d3
- Ribosomal protein S9 (Predicted)
- Chain j3
- 40S ribosomal protein S4
Coloring options: