IL_6ZVK_041

3D structure

PDB id

6ZVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

CGGCC*GAAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZVK_041 not in the Motif Atlas

Geometric match to IL_5TBW_121

Geometric discrepancy: 0.3537

The information below is about IL_5TBW_121

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05145.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

6ZVK|1|K3|C|927
6ZVK|1|K3|G|928
6ZVK|1|K3|G|929
6ZVK|1|K3|C|930
6ZVK|1|K3|C|931
*
6ZVK|1|K3|G|1010
6ZVK|1|K3|A|1011
6ZVK|1|K3|A|1012
6ZVK|1|K3|U|1013
6ZVK|1|K3|G|1014

Current chains

Chain K3

18S RIBOSOMAL RNA

Nearby chains

Chain F3

ribosomal protein uS15

Chain L3

40S ribosomal protein S27

Chain V3

40S ribosomal protein S3a