IL_6ZVK_044
3D structure
- PDB id
- 6ZVK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.49 Å
Loop
- Sequence
- GCUAG*CUUGGACC
- Length
- 13 nucleotides
- Bulged bases
- 6ZVK|1|K3|G|970
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZVK_044 not in the Motif Atlas
- Homologous match to IL_4V88_434
- Geometric discrepancy: 0.3681
- The information below is about IL_4V88_434
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_45067.5
- Basepair signature
- cWW-tSH-tSS-tHS-R-cWW-cWW-R
- Number of instances in this motif group
- 16
Unit IDs
6ZVK|1|K3|G|952
6ZVK|1|K3|C|953
6ZVK|1|K3|U|954
6ZVK|1|K3|A|955
6ZVK|1|K3|G|956
*
6ZVK|1|K3|C|967
6ZVK|1|K3|U|968
6ZVK|1|K3|U|969
6ZVK|1|K3|G|970
6ZVK|1|K3|G|971
6ZVK|1|K3|A|972
6ZVK|1|K3|C|973
6ZVK|1|K3|C|974
Current chains
- Chain K3
- 18S RIBOSOMAL RNA
Nearby chains
- Chain E1
- INTERNAL RIBOSOME ENTRY SITE
- Chain V3
- 40S ribosomal protein S3a
- Chain a5
- 40S RIBOSOMAL PROTEIN US11
- Chain e2
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: