IL_6ZVK_050
3D structure
- PDB id
- 6ZVK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.49 Å
Loop
- Sequence
- GGAGUAUG*UGAAAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZVK_050 not in the Motif Atlas
- Homologous match to IL_4V88_440
- Geometric discrepancy: 0.1408
- The information below is about IL_4V88_440
- Detailed Annotation
- 8x6 Sarcin-Ricin with inserted Y; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_41756.1
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
6ZVK|1|K3|G|1168
6ZVK|1|K3|G|1169
6ZVK|1|K3|A|1170
6ZVK|1|K3|G|1171
6ZVK|1|K3|U|1172
6ZVK|1|K3|A|1173
6ZVK|1|K3|U|1174
6ZVK|1|K3|G|1175
*
6ZVK|1|K3|U|1186
6ZVK|1|K3|G|1187
6ZVK|1|K3|A|1188
6ZVK|1|K3|A|1189
6ZVK|1|K3|A|1190
6ZVK|1|K3|C|1191
Current chains
- Chain K3
- 18S RIBOSOMAL RNA
Nearby chains
- Chain T3
- Ribosomal protein S23
- Chain X3
- 60s ribosomal protein l41
- Chain e2
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: