IL_6ZVK_055

3D structure

PDB id

6ZVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

CC*GGG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZVK_055 not in the Motif Atlas

Geometric match to IL_5J7L_032

Geometric discrepancy: 0.1823

The information below is about IL_5J7L_032

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_26793.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

16

Unit IDs

6ZVK|1|K3|C|1267
6ZVK|1|K3|C|1268
*
6ZVK|1|K3|G|1514
6ZVK|1|K3|G|1515
6ZVK|1|K3|G|1516

Current chains

Chain K3

18S RIBOSOMAL RNA

Nearby chains

Chain A3

ribosomal protein uS19

Chain H3

ribosomal protein uS14

Chain Q3

40S RIBOSOMAL PROTEIN ES31