IL_6ZVK_056

3D structure

PDB id

6ZVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

GCCC*GUC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZVK_056 not in the Motif Atlas

Geometric match to IL_4WSM_372

Geometric discrepancy: 0.3697

The information below is about IL_4WSM_372

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_16315.2

Basepair signature

cWW-cWW-L-cWW

Number of instances in this motif group

4

Unit IDs

6ZVK|1|K3|G|1270
6ZVK|1|K3|C|1271
6ZVK|1|K3|C|1272
6ZVK|1|K3|C|1273
*
6ZVK|1|K3|G|1510
6ZVK|1|K3|U|1511
6ZVK|1|K3|C|1512

Current chains

Chain K3

18S RIBOSOMAL RNA

Nearby chains

Chain E3

S10_plectin domain-containing protein

Chain H3

ribosomal protein uS14

Chain Q3

40S RIBOSOMAL PROTEIN ES31