IL_6ZVK_062

3D structure

PDB id

6ZVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

ACUA*UUCU

Length

8 nucleotides

Bulged bases

6ZVK|1|K3|C|1403, 6ZVK|1|K3|U|1404

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZVK_062 not in the Motif Atlas

Homologous match to IL_4V88_456

Geometric discrepancy: 0.2186

The information below is about IL_4V88_456

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_76458.1

Basepair signature

cWW-cSH-L-cWW

Number of instances in this motif group

2

Unit IDs

6ZVK|1|K3|A|1402
6ZVK|1|K3|C|1403
6ZVK|1|K3|U|1404
6ZVK|1|K3|A|1405
*
6ZVK|1|K3|U|1441
6ZVK|1|K3|U|1442
6ZVK|1|K3|C|1443
6ZVK|1|K3|U|1444

Current chains

Chain K3

18S RIBOSOMAL RNA

Nearby chains

Chain B3

40S RIBOSOMAL PROTEIN US9

Chain I3

Ribosomal_S10 domain-containing protein

Chain a3

ribosomal protein RACK1