IL_6ZVK_065

3D structure

PDB id

6ZVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

CCCG*CG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZVK_065 not in the Motif Atlas

Geometric match to IL_4C7O_002

Geometric discrepancy: 0.3661

The information below is about IL_4C7O_002

Detailed Annotation

Single stack bend

Broad Annotation

Single stack bend

Motif group

IL_90729.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

30

Unit IDs

6ZVK|1|K3|C|1417
6ZVK|1|K3|C|1418
6ZVK|1|K3|C|1419
6ZVK|1|K3|G|1420
*
6ZVK|1|K3|C|1427
6ZVK|1|K3|G|1428

Current chains

Chain K3

18S RIBOSOMAL RNA

Nearby chains

Chain B3

40S RIBOSOMAL PROTEIN US9

Chain H5

40S RIBOSOMAL PROTEIN ES19