IL_6ZVK_070

3D structure

PDB id

6ZVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

6ZVK|1|K3|C|1701, 6ZVK|1|K3|A|1835

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZVK_070 not in the Motif Atlas

Geometric match to IL_4V88_463

Geometric discrepancy: 0.2863

The information below is about IL_4V88_463

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

5

Unit IDs

6ZVK|1|K3|C|1700
6ZVK|1|K3|C|1701
6ZVK|1|K3|G|1702
*
6ZVK|1|K3|C|1833
6ZVK|1|K3|A|1834
6ZVK|1|K3|A|1835
6ZVK|1|K3|G|1836

Current chains

Chain K3

18S RIBOSOMAL RNA

Nearby chains

Chain E1

INTERNAL RIBOSOME ENTRY SITE

Chain O3

40S RIBOSOMAL PROTEIN ES26