IL_6ZVK_083
3D structure
- PDB id
- 6ZVK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.49 Å
Loop
- Sequence
- CA*UCG
- Length
- 5 nucleotides
- Bulged bases
- 6ZVK|1|d2|C|63
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZVK_083 not in the Motif Atlas
- Homologous match to IL_5TBW_372
- Geometric discrepancy: 0.2946
- The information below is about IL_5TBW_372
- Detailed Annotation
- Single bulged A
- Broad Annotation
- No text annotation
- Motif group
- IL_31462.1
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 127
Unit IDs
6ZVK|1|d2|C|15
6ZVK|1|d2|A|16
*
6ZVK|1|d2|U|62
6ZVK|1|d2|C|63
6ZVK|1|d2|G|64
Current chains
- Chain d2
- 5S RIBOSOMAL RNA
Nearby chains
- Chain G2
- 60S ribosomal protein L5
- Chain X2
- Ribosomal protein L10 (Predicted)
- Chain Y2
- Ribosomal protein L11
- Chain e2
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: