IL_6ZVK_089
3D structure
- PDB id
- 6ZVK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.49 Å
Loop
- Sequence
- GAUG*CGC
- Length
- 7 nucleotides
- Bulged bases
- 6ZVK|1|d2|U|84
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZVK_089 not in the Motif Atlas
- Homologous match to IL_5TBW_378
- Geometric discrepancy: 0.1291
- The information below is about IL_5TBW_378
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_44258.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 301
Unit IDs
6ZVK|1|d2|G|82
6ZVK|1|d2|A|83
6ZVK|1|d2|U|84
6ZVK|1|d2|G|85
*
6ZVK|1|d2|C|92
6ZVK|1|d2|G|93
6ZVK|1|d2|C|94
Current chains
- Chain d2
- 5S RIBOSOMAL RNA
Nearby chains
- Chain 62
- 60S RIBOSOMAL PROTEIN EL20
- Chain L2
- Ribosomal protein L10 (Predicted)
- Chain U2
- uL30
- Chain X2
- Ribosomal protein L10 (Predicted)
- Chain e2
- Large subunit ribosomal RNA; LSU rRNA
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