IL_6ZVK_126

3D structure

PDB id

6ZVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

GG*CCAC

Length

6 nucleotides

Bulged bases

6ZVK|1|e2|C|1237

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZVK_126 not in the Motif Atlas

Geometric match to IL_5J7L_269

Geometric discrepancy: 0.2601

The information below is about IL_5J7L_269

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_26793.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

16

Unit IDs

6ZVK|1|e2|G|1073
6ZVK|1|e2|G|1074
*
6ZVK|1|e2|C|1236
6ZVK|1|e2|C|1237
6ZVK|1|e2|A|1238
6ZVK|1|e2|C|1239

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain R2

Ribosomal_L6e_N domain-containing protein

Chain U2

uL30

Chain t2

uL4