IL_6ZVK_130

3D structure

PDB id

6ZVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

CUC*GCCCG

Length

8 nucleotides

Bulged bases

6ZVK|1|e2|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZVK_130 not in the Motif Atlas

Geometric match to IL_5Z1I_003

Geometric discrepancy: 0.3639

The information below is about IL_5Z1I_003

Detailed Annotation

Decoding loop related

Broad Annotation

Decoding loop related

Motif group

IL_31737.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

11

Unit IDs

6ZVK|1|e2|C|1082
6ZVK|1|e2|U|1083
6ZVK|1|e2|C|1084
*
6ZVK|1|e2|G|1213
6ZVK|1|e2|C|1214
6ZVK|1|e2|C|1215
6ZVK|1|e2|C|1216
6ZVK|1|e2|G|1217

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain U2

uL30