IL_6ZVK_136

3D structure

PDB id

6ZVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

GGAUC*GCGCAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZVK_136 not in the Motif Atlas

Geometric match to IL_4V9F_018

Geometric discrepancy: 0.2834

The information below is about IL_4V9F_018

Detailed Annotation

Triple sheared related

Broad Annotation

Triple sheared

Motif group

IL_67427.1

Basepair signature

cWW-cWW-L-R-L-R-cWW-cWW

Number of instances in this motif group

2

Unit IDs

6ZVK|1|e2|G|1425
6ZVK|1|e2|G|1426
6ZVK|1|e2|A|1427
6ZVK|1|e2|U|1428
6ZVK|1|e2|C|1429
*
6ZVK|1|e2|G|1455
6ZVK|1|e2|C|1456
6ZVK|1|e2|G|1457
6ZVK|1|e2|C|1458
6ZVK|1|e2|A|1459
6ZVK|1|e2|C|1460

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain S2

60S RIBOSOMAL PROTEIN EL18

Chain r2

60S ribosomal protein L29