IL_6ZVK_141
3D structure
- PDB id
- 6ZVK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.49 Å
Loop
- Sequence
- GAAAG*CUAGUAGC
- Length
- 13 nucleotides
- Bulged bases
- 6ZVK|1|e2|A|1650, 6ZVK|1|e2|G|1654
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZVK_141 not in the Motif Atlas
- Homologous match to IL_8C3A_030
- Geometric discrepancy: 0.1327
- The information below is about IL_8C3A_030
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_17470.7
- Basepair signature
- cWW-tWW-L-R-tWH-L-cWW
- Number of instances in this motif group
- 7
Unit IDs
6ZVK|1|e2|G|1522
6ZVK|1|e2|A|1523
6ZVK|1|e2|A|1524
6ZVK|1|e2|A|1525
6ZVK|1|e2|G|1526
*
6ZVK|1|e2|C|1648
6ZVK|1|e2|U|1649
6ZVK|1|e2|A|1650
6ZVK|1|e2|G|1651
6ZVK|1|e2|U|1652
6ZVK|1|e2|A|1653
6ZVK|1|e2|G|1654
6ZVK|1|e2|C|1655
Current chains
- Chain e2
- 28S RIBOSOMAL RNA
Nearby chains
- Chain 12
- Ribosomal protein L15
- Chain C2
- Ribosomal protein L37
- Chain a7
- 60S ribosomal protein L13
- Chain q2
- uL15
- Chain t2
- uL4
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