IL_6ZVK_146
3D structure
- PDB id
- 6ZVK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.49 Å
Loop
- Sequence
- GGG*UAAUC
- Length
- 8 nucleotides
- Bulged bases
- 6ZVK|1|e2|A|1637, 6ZVK|1|e2|A|1638
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZVK_146 not in the Motif Atlas
- Homologous match to IL_8C3A_036
- Geometric discrepancy: 0.3215
- The information below is about IL_8C3A_036
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_90991.8
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 6
Unit IDs
6ZVK|1|e2|G|1624
6ZVK|1|e2|G|1625
6ZVK|1|e2|G|1626
*
6ZVK|1|e2|U|1636
6ZVK|1|e2|A|1637
6ZVK|1|e2|A|1638
6ZVK|1|e2|U|1639
6ZVK|1|e2|C|1640
Current chains
- Chain e2
- 28S RIBOSOMAL RNA
Nearby chains
- Chain 12
- Ribosomal protein L15
- Chain 92
- 60S RIBOSOMAL PROTEIN UL2
- Chain C2
- Ribosomal protein L37
- Chain H2
- uL22
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