IL_6ZVK_151
3D structure
- PDB id
- 6ZVK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.49 Å
Loop
- Sequence
- GCGAAU*AAAC
- Length
- 10 nucleotides
- Bulged bases
- 6ZVK|1|e2|G|1741, 6ZVK|1|e2|A|1787, 6ZVK|1|e2|A|1788
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZVK_151 not in the Motif Atlas
- Homologous match to IL_8C3A_043
- Geometric discrepancy: 0.1704
- The information below is about IL_8C3A_043
- Detailed Annotation
- C-loop with bulged stacked A's
- Broad Annotation
- C-loop
- Motif group
- IL_02509.3
- Basepair signature
- cWW-cWS-cWW-cWW-R-cSH-tWH-R
- Number of instances in this motif group
- 6
Unit IDs
6ZVK|1|e2|G|1739
6ZVK|1|e2|C|1740
6ZVK|1|e2|G|1741
6ZVK|1|e2|A|1742
6ZVK|1|e2|A|1743
6ZVK|1|e2|U|1744
*
6ZVK|1|e2|A|1786
6ZVK|1|e2|A|1787
6ZVK|1|e2|A|1788
6ZVK|1|e2|C|1789
Current chains
- Chain e2
- 28S RIBOSOMAL RNA
Nearby chains
- Chain 72
- eL21
- Chain G2
- 60S ribosomal protein L5
- Chain L2
- Ribosomal protein L10 (Predicted)
- Chain X2
- Ribosomal protein L10 (Predicted)
- Chain d2
- 5S ribosomal RNA; 5S rRNA
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