IL_6ZVK_163
3D structure
- PDB id
- 6ZVK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.49 Å
Loop
- Sequence
- GACCCCAGAAAA*UGAAAAUGGAUGGCGC
- Length
- 28 nucleotides
- Bulged bases
- 6ZVK|1|e2|C|1934, 6ZVK|1|e2|G|1939, 6ZVK|1|e2|A|2040, 6ZVK|1|e2|U|2043
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZVK_163 not in the Motif Atlas
- Geometric match to IL_5TBW_052
- Geometric discrepancy: 0.382
- The information below is about IL_5TBW_052
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_53762.1
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
6ZVK|1|e2|G|1932
6ZVK|1|e2|A|1933
6ZVK|1|e2|C|1934
6ZVK|1|e2|C|1935
6ZVK|1|e2|C|1936
6ZVK|1|e2|C|1937
6ZVK|1|e2|A|1938
6ZVK|1|e2|G|1939
6ZVK|1|e2|A|1940
6ZVK|1|e2|A|1941
6ZVK|1|e2|A|1942
6ZVK|1|e2|A|1943
*
6ZVK|1|e2|U|2037
6ZVK|1|e2|G|2038
6ZVK|1|e2|A|2039
6ZVK|1|e2|A|2040
6ZVK|1|e2|A|2041
6ZVK|1|e2|A|2042
6ZVK|1|e2|U|2043
6ZVK|1|e2|G|2044
6ZVK|1|e2|G|2045
6ZVK|1|e2|A|2046
6ZVK|1|e2|U|2047
6ZVK|1|e2|G|2048
6ZVK|1|e2|G|2049
6ZVK|1|e2|C|2050
6ZVK|1|e2|G|2051
6ZVK|1|e2|C|2052
Current chains
- Chain e2
- 28S RIBOSOMAL RNA
Nearby chains
- Chain 52
- uL3
- Chain E2
- 60S RIBOSOMAL PROTEIN EL40
- Chain L2
- Ribosomal protein L10 (Predicted)
- Chain X2
- Ribosomal protein L10 (Predicted)
- Chain d2
- 5S ribosomal RNA; 5S rRNA
- Chain w2
- 60S RIBOSOMAL PROTEIN UL13
- Chain x2
- eL33
Coloring options: