IL_6ZVK_176
3D structure
- PDB id
- 6ZVK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.49 Å
Loop
- Sequence
- CUGAG*CGAAAG
- Length
- 11 nucleotides
- Bulged bases
- 6ZVK|1|e2|A|2512, 6ZVK|1|e2|A|2513
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZVK_176 not in the Motif Atlas
- Homologous match to IL_8C3A_067
- Geometric discrepancy: 0.1135
- The information below is about IL_8C3A_067
- Detailed Annotation
- UAA/GAN
- Broad Annotation
- No text annotation
- Motif group
- IL_89002.4
- Basepair signature
- cWW-tWH-cWW-L-cWW-tHS
- Number of instances in this motif group
- 15
Unit IDs
6ZVK|1|e2|C|2446
6ZVK|1|e2|U|2447
6ZVK|1|e2|G|2448
6ZVK|1|e2|A|2449
6ZVK|1|e2|G|2450
*
6ZVK|1|e2|C|2509
6ZVK|1|e2|G|2510
6ZVK|1|e2|A|2511
6ZVK|1|e2|A|2512
6ZVK|1|e2|A|2513
6ZVK|1|e2|G|2514
Current chains
- Chain e2
- 28S RIBOSOMAL RNA
Nearby chains
- Chain 92
- 60S RIBOSOMAL PROTEIN UL2
- Chain C2
- Ribosomal protein L37
- Chain D2
- ribosomal protein eL39
- Chain h2
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain y2
- eL34
Coloring options: