IL_6ZVK_191

3D structure

PDB id

6ZVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

CGUAAC*GGAUAAG

Length

13 nucleotides

Bulged bases

6ZVK|1|e2|U|2880

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZVK_191 not in the Motif Atlas

Homologous match to IL_8C3A_084

Geometric discrepancy: 0.14

The information below is about IL_8C3A_084

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65969.4

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

6ZVK|1|e2|C|2867
6ZVK|1|e2|G|2868
6ZVK|1|e2|U|2869
6ZVK|1|e2|A|2870
6ZVK|1|e2|A|2871
6ZVK|1|e2|C|2872
*
6ZVK|1|e2|G|2877
6ZVK|1|e2|G|2878
6ZVK|1|e2|A|2879
6ZVK|1|e2|U|2880
6ZVK|1|e2|A|2881
6ZVK|1|e2|A|2882
6ZVK|1|e2|G|2883

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain I2

ribosomal protein eL43

Chain K3

Small subunit ribosomal RNA; SSU rRNA

Chain X3

60s ribosomal protein l41