IL_6ZVK_201

3D structure

PDB id

6ZVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

UCAAAGU*AAUGAAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZVK_201 not in the Motif Atlas

Homologous match to IL_8C3A_093

Geometric discrepancy: 0.219

The information below is about IL_8C3A_093

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_36973.8

Basepair signature

cWW-tSH-L-R-L-R-L-R-cWW-cWW

Number of instances in this motif group

3

Unit IDs

6ZVK|1|e2|U|3715
6ZVK|1|e2|C|3716
6ZVK|1|e2|A|3717
6ZVK|1|e2|A|3718
6ZVK|1|e2|A|3719
6ZVK|1|e2|G|3720
6ZVK|1|e2|U|3721
*
6ZVK|1|e2|A|3732
6ZVK|1|e2|A|3733
6ZVK|1|e2|U|3734
6ZVK|1|e2|G|3735
6ZVK|1|e2|A|3736
6ZVK|1|e2|A|3737
6ZVK|1|e2|G|3738

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain 92

60S RIBOSOMAL PROTEIN UL2

Chain B2

60S ribosomal protein L36

Chain F2

eL42