IL_6ZVK_203

3D structure

PDB id

6ZVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

CCAAAUGCCUCG*CGCG

Length

16 nucleotides

Bulged bases

6ZVK|1|e2|A|3785, 6ZVK|1|e2|C|3791, 6ZVK|1|e2|C|3810

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZVK_203 not in the Motif Atlas

Geometric match to IL_5TBW_090

Geometric discrepancy: 0.2088

The information below is about IL_5TBW_090

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_66080.1

Basepair signature

cWW-cWW-tSH-L-cWW-L

Number of instances in this motif group

5

Unit IDs

6ZVK|1|e2|C|3781
6ZVK|1|e2|C|3782
6ZVK|1|e2|A|3783
6ZVK|1|e2|A|3784
6ZVK|1|e2|A|3785
6ZVK|1|e2|U|3786
6ZVK|1|e2|G|3787
6ZVK|1|e2|C|3788
6ZVK|1|e2|C|3789
6ZVK|1|e2|U|3790
6ZVK|1|e2|C|3791
6ZVK|1|e2|G|3792
*
6ZVK|1|e2|C|3808
6ZVK|1|e2|G|3809
6ZVK|1|e2|C|3810
6ZVK|1|e2|G|3811

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain K3

Small subunit ribosomal RNA; SSU rRNA

Chain X3

60s ribosomal protein l41