IL_6ZVK_210

3D structure

PDB id

6ZVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

CC*GCGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZVK_210 not in the Motif Atlas

Geometric match to IL_8C3A_145

Geometric discrepancy: 0.3928

The information below is about IL_8C3A_145

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_15052.3

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

8

Unit IDs

6ZVK|1|e2|C|3986
6ZVK|1|e2|C|3987
*
6ZVK|1|e2|G|4014
6ZVK|1|e2|C|4015
6ZVK|1|e2|G|4016
6ZVK|1|e2|G|4017

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains