IL_6ZVK_234

3D structure

PDB id

6ZVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

UGUAUG*CGAAG

Length

11 nucleotides

Bulged bases

6ZVK|1|e2|U|4634, 6ZVK|1|e2|U|4636

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZVK_234 not in the Motif Atlas

Homologous match to IL_5TBW_118

Geometric discrepancy: 0.2929

The information below is about IL_5TBW_118

Detailed Annotation

UAA/GAN related

Broad Annotation

UAA/GAN related

Motif group

IL_17136.4

Basepair signature

cWW-R-L-tHS-tHW-cWW

Number of instances in this motif group

18

Unit IDs

6ZVK|1|e2|U|4632
6ZVK|1|e2|G|4633
6ZVK|1|e2|U|4634
6ZVK|1|e2|A|4635
6ZVK|1|e2|U|4636
6ZVK|1|e2|G|4637
*
6ZVK|1|e2|C|4662
6ZVK|1|e2|G|4663
6ZVK|1|e2|A|4664
6ZVK|1|e2|A|4665
6ZVK|1|e2|G|4666

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain 52

uL3

Chain l2

Ribosomal protein L24

Chain u2

eL31