IL_6ZVK_235

3D structure

PDB id

6ZVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

UGC*GGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZVK_235 not in the Motif Atlas

Geometric match to IL_3R1C_012

Geometric discrepancy: 0.1099

The information below is about IL_3R1C_012

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10167.5

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

55

Unit IDs

6ZVK|1|e2|U|4638
6ZVK|1|e2|G|4639
6ZVK|1|e2|C|4640
*
6ZVK|1|e2|G|4659
6ZVK|1|e2|G|4660
6ZVK|1|e2|G|4661

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain l2

Ribosomal protein L24

Chain u2

eL31