IL_6ZVK_259

3D structure

PDB id

6ZVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

UUACC*GUA

Length

8 nucleotides

Bulged bases

6ZVK|1|K3|U|488

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZVK_259 not in the Motif Atlas

Geometric match to IL_4N0T_004

Geometric discrepancy: 0.3772

The information below is about IL_4N0T_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_32983.2

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

8

Unit IDs

6ZVK|1|K3|U|487
6ZVK|1|K3|U|488
6ZVK|1|K3|A|489
6ZVK|1|K3|C|490
6ZVK|1|K3|C|491
*
6ZVK|1|K3|G|510
6ZVK|1|K3|U|511
6ZVK|1|K3|A|512

Current chains

Chain K3

18S RIBOSOMAL RNA

Nearby chains

Chain I5

40S ribosomal protein S24

Chain d3

Ribosomal protein S9 (Predicted)

Chain j3

40S ribosomal protein S4