IL_6ZVK_285

3D structure

PDB id

6ZVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

CAUUG*CCAAGCG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZVK|1|e2|C|4466
6ZVK|1|e2|A|4467
6ZVK|1|e2|U|4468
6ZVK|1|e2|U|4469
6ZVK|1|e2|G|4470
*
6ZVK|1|e2|C|4485
6ZVK|1|e2|C|4486
6ZVK|1|e2|A|4487
6ZVK|1|e2|A|4488
6ZVK|1|e2|G|4489
6ZVK|1|e2|C|4490
6ZVK|1|e2|G|4491

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain 52

uL3

Chain E2

60S RIBOSOMAL PROTEIN EL40

Chain W2

60S RIBOSOMAL PROTEIN UL6

Chain k2

eL14

Chain w2

60S RIBOSOMAL PROTEIN UL13