IL_6ZVK_288
3D structure
- PDB id
- 6ZVK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.49 Å
Loop
- Sequence
- UAAU*AUCGA
- Length
- 9 nucleotides
- Bulged bases
- 6ZVK|1|h2|G|94
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZVK_288 not in the Motif Atlas
- Geometric match to IL_2O3Y_003
- Geometric discrepancy: 0.3556
- The information below is about IL_2O3Y_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_51479.1
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 10
Unit IDs
6ZVK|1|h2|U|64
6ZVK|1|h2|A|65
6ZVK|1|h2|A|66
6ZVK|1|h2|U|67
*
6ZVK|1|h2|A|91
6ZVK|1|h2|U|92
6ZVK|1|h2|C|93
6ZVK|1|h2|G|94
6ZVK|1|h2|A|95
Current chains
- Chain h2
- 5.8S RIBOSOMAL RNA
Nearby chains
- Chain A2
- uL29
- Chain C2
- Ribosomal protein L37
- Chain e2
- Large subunit ribosomal RNA; LSU rRNA
- Chain o2
- Ribosomal protein L26
Coloring options: