IL_6ZVK_289

3D structure

PDB id

6ZVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

GA*UUU

Length

5 nucleotides

Bulged bases

6ZVK|1|K3|U|1016

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZVK_289 not in the Motif Atlas

Geometric match to IL_8C3A_424

Geometric discrepancy: 0.3482

The information below is about IL_8C3A_424

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

94

Unit IDs

6ZVK|1|K3|G|925
6ZVK|1|K3|A|926
*
6ZVK|1|K3|U|1015
6ZVK|1|K3|U|1016
6ZVK|1|K3|U|1017

Current chains

Chain K3

18S RIBOSOMAL RNA

Nearby chains

Chain F3

ribosomal protein uS15

Chain J5

Ribosomal protein S15a

Chain L3

40S ribosomal protein S27