IL_6ZVK_297

3D structure

PDB id

6ZVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

GUG*UUUUU

Length

8 nucleotides

Bulged bases

6ZVK|1|e2|U|4437

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZVK_297 not in the Motif Atlas

Homologous match to IL_8CRE_113

Geometric discrepancy: 0.2142

The information below is about IL_8CRE_113

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_51387.2

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

20

Unit IDs

6ZVK|1|e2|G|4405
6ZVK|1|e2|U|4406
6ZVK|1|e2|G|4407
*
6ZVK|1|e2|U|4435
6ZVK|1|e2|U|4436
6ZVK|1|e2|U|4437
6ZVK|1|e2|U|4438
6ZVK|1|e2|U|4439

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain 52

uL3

Chain L2

Ribosomal protein L10 (Predicted)