Motif IL_51387.2 Version IL_51387.2 of this group appears in releases 3.95 to 3.96
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 1-7 | 2-3 | 2-6 | 3-6 | 4-5 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3PDR_004 | 3PDR | 0.5416 | 0 | Major groove platform with extra cWW | X | M-box riboswitch (ykoK leader) | C | 33 | U | 34 | C | 35 | C | 36 | * | G | 149 | U | 150 | G | 151 | cWW | cSH | cwW | cWW | |
| 2 | IL_4V9F_003 | 4V9F | 0.5113 | 0 | Major groove platform with extra cWW | 0 | LSU rRNA | C | 440 | A | 441 | A | 442 | C | 443 | * | G | 39 | C | 40 | G | 41 | cWW | cSH | cWWa | ncWW | cWW |
| 3 | IL_8CRE_059 | 8CRE | 0.3462 | 1 | Major groove platform with extra cWW (H) | 1 | LSU rRNA | G | 1258 | G | 1260 | U | 1261 | G | 1262 | * | C | 1271 | U | 1272 | C | 1273 | cWW | ncSH | ncWw | cWW | |
| 4 | IL_8P9A_284 | 8P9A | 0.3548 | 1 | Major groove platform with extra cWW (H) | AR | LSU rRNA | G | 1262 | G | 1264 | U | 1265 | G | 1266 | * | C | 1275 | U | 1276 | C | 1277 | cWW | cSH | cWw | cWW | |
| 5 | IL_1MMS_002 | 1MMS | 0.2958 | 1 | Major groove platform with extra cWW | C | 23S RIBOSOMAL RNA | G | 1087 | G | 1089 | U | 1090 | G | 1091 | * | C | 1100 | U | 1101 | C | 1102 | cWW | cSH | cWw | cWW | |
| 6 | IL_5D8H_003 | 5D8H | 0.2859 | 1 | Major groove platform with extra cWW | A | LSU rRNA | G | 1197 | G | 1199 | U | 1200 | G | 1201 | * | C | 1210 | U | 1211 | C | 1212 | cWW | cSH | cWw | cWW | |
| 7 | IL_4V9F_028 | 4V9F | 0.1395 | 0 | Major groove platform with extra cWW | 0 | LSU rRNA | G | 830 | U | 831 | U | 832 | G | 833 | * | C | 849 | U | 850 | C | 851 | cWW | cSH | cWw | cWW | |
| 8 | IL_8CRE_034 | 8CRE | 0.1054 | 0 | Major groove platform with extra cWW (H) | 1 | LSU rRNA | G | 865 | G | 866 | U | 867 | U | 868 | * | A | 884 | U | 885 | C | 886 | cWW | cSH | cWw | cWW | |
| 9 | IL_8P9A_259 | 8P9A | 0.0904 | 0 | Major groove platform with extra cWW (H) | AR | LSU rRNA | G | 869 | G | 870 | U | 871 | U | 872 | * | A | 888 | U | 889 | C | 890 | cWW | cSH | cWw | cWW | |
| 10 | IL_9DFE_020 | 9DFE | 0.0000 | 0 | Major groove platform with extra cWW (H) | 1A | LSU rRNA | G | 738 | G | 739 | U | 740 | G | 741 | * | C | 756 | U | 757 | C | 758 | cWW | cSH | ntSH | cWw | cWW |
| 11 | IL_7A0S_019 | 7A0S | 0.0914 | 0 | Major groove platform with extra cWW | X | LSU rRNA | G | 751 | G | 752 | U | 753 | G | 754 | * | C | 769 | U | 770 | C | 771 | cWW | cSH | cWw | cWW | |
| 12 | IL_8CRE_403 | 8CRE | 0.1543 | 1 | Major groove platform with extra cWW (H) | CM | SSU rRNA | U | 257 | U | 259 | U | 260 | C | 261 | * | G | 202 | U | 203 | A | 204 | cWW | cSH | cWw | cWW | |
| 13 | IL_8P9A_386 | 8P9A | 0.1613 | 1 | Major groove platform with extra cWW (H) | sR | SSU rRNA | U | 259 | U | 261 | U | 262 | C | 263 | * | G | 204 | U | 205 | A | 206 | cWW | cSH | cWw | cWW | |
| 14 | IL_8P9A_332 | 8P9A | 0.3238 | 1 | Major groove minor groove platform with extra cWW (H) | AR | LSU rRNA | U | 2858 | U | 2859 | U | 2861 | U | 2862 | * | G | 2828 | U | 2829 | G | 2830 | cWW | ncWH | cWw | cWW | |
| 15 | IL_8CRE_113 | 8CRE | 0.3336 | 1 | Major groove minor groove platform with extra cWW (H) | 1 | LSU rRNA | U | 2830 | U | 2831 | U | 2833 | U | 2834 | * | G | 2800 | U | 2801 | G | 2802 | cWW | cWw | cWW | ||
| 16 | IL_4V9F_084 | 4V9F | 0.3539 | 1 | Major groove minor groove platform with extra cWW | 0 | LSU rRNA | G | 2524 | G | 2525 | U | 2527 | U | 2528 | * | G | 2494 | U | 2495 | C | 2496 | cWW | cSH | cWw | cWW | |
| 17 | IL_5J7L_337 | 5J7L | 0.4071 | 1 | Major groove minor groove platform with extra cWW | DA | LSU rRNA | U | 2489 | G | 2490 | U | 2492 | U | 2493 | * | A | 2459 | U | 2460 | A | 2461 | cWW | cSH | cWw | cWW | |
| 18 | IL_9DFE_094 | 9DFE | 0.3761 | 1 | Major groove minor groove platform with extra cWW (H) | 1A | LSU rRNA | G | 2489 | G | 2490 | U | 2492 | U | 2493 | * | A | 2459 | U | 2460 | C | 2461 | cWW | cSH | cWw | cWW | |
| 19 | IL_4WF9_092 | 4WF9 | 0.3883 | 1 | Major groove minor groove platform with extra cWW | X | LSU rRNA | G | 2516 | G | 2517 | U | 2519 | U | 2520 | * | A | 2486 | U | 2487 | C | 2488 | cWW | cSH | cWw | cWW | |
| 20 | IL_7A0S_086 | 7A0S | 0.3968 | 1 | Major groove minor groove platform with extra cWW | X | LSU rRNA | G | 2468 | G | 2469 | U | 2471 | U | 2472 | * | A | 2438 | U | 2439 | C | 2440 | cWW | cSH | ncWB | cWw | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAGUG*CUC | 4 |
| GGUUU*AUC | 3 |
| GGUU*AUC | 2 |
| GGUG*CUC | 2 |
| UUUUC*GUA | 2 |
| UUUUU*GUG | 2 |
| CUCC*GUG | 1 |
| CAAC*GCG | 1 |
| GUUG*CUC | 1 |
| GGCUU*GUC | 1 |
| UGUUU*AUA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AGU*U | 4 |
| GU*U | 4 |
| UUU*U | 4 |
| GUU*U | 4 |
| UC*U | 1 |
| AA*C | 1 |
| UU*U | 1 |
| GCU*U | 1 |
- Annotations
-
- Major groove platform with extra cWW (H) (7)
- Major groove platform with extra cWW (6)
- Major groove minor groove platform with extra cWW (4)
- Major groove minor groove platform with extra cWW (H) (3)
- Basepair signature
- cWW-cSH-cWW-cWW
- Heat map statistics
- Min 0.05 | Avg 0.37 | Max 0.71
Coloring options: