IL_6ZXD_068
3D structure
- PDB id
- 6ZXD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a late human pre-40S ribosomal subunit - State F1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GUGCAU*AUGC
- Length
- 10 nucleotides
- Bulged bases
- 6ZXD|1|2|C|1331
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZXD_068 not in the Motif Atlas
- Geometric match to IL_4V88_473
- Geometric discrepancy: 0.3019
- The information below is about IL_4V88_473
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_36174.1
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 15
Unit IDs
6ZXD|1|2|G|1328
6ZXD|1|2|U|1329
6ZXD|1|2|G|1330
6ZXD|1|2|C|1331
6ZXD|1|2|A|1332
6ZXD|1|2|U|1333
*
6ZXD|1|2|A|1498
6ZXD|1|2|U|1499
6ZXD|1|2|G|1500
6ZXD|1|2|C|1501
Current chains
- Chain 2
- pre-18S ribosomal RNA
Nearby chains
- Chain D
- 40S ribosomal protein S3
- Chain K
- 40S ribosomal protein S10
- Chain U
- 40S ribosomal protein S20
- Chain d
- 40S ribosomal protein S29
- Chain f
- Ubiquitin-40S ribosomal protein S27a
- Chain z
- Serine/threonine-protein kinase RIO1
Coloring options: