IL_6ZXD_070
3D structure
- PDB id
- 6ZXD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a late human pre-40S ribosomal subunit - State F1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CG*CAG
- Length
- 5 nucleotides
- Bulged bases
- 6ZXD|1|2|A|1489
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZXD_070 not in the Motif Atlas
- Homologous match to IL_4V88_452
- Geometric discrepancy: 0.1725
- The information below is about IL_4V88_452
- Detailed Annotation
- Single bulged A
- Broad Annotation
- No text annotation
- Motif group
- IL_31462.1
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 127
Unit IDs
6ZXD|1|2|C|1337
6ZXD|1|2|G|1338
*
6ZXD|1|2|C|1488
6ZXD|1|2|A|1489
6ZXD|1|2|G|1490
Current chains
- Chain 2
- pre-18S ribosomal RNA
Nearby chains
- Chain D
- 40S ribosomal protein S3
- Chain Q
- 40S ribosomal protein S16
- Chain U
- 40S ribosomal protein S20
- Chain d
- 40S ribosomal protein S29
- Chain z
- Serine/threonine-protein kinase RIO1
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