IL_6ZXD_075

3D structure

PDB id

6ZXD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a late human pre-40S ribosomal subunit - State F1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUUA*UAAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZXD_075 not in the Motif Atlas

Geometric match to IL_4K27_001

Geometric discrepancy: 0.2164

The information below is about IL_4K27_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

6ZXD|1|2|G|1406
6ZXD|1|2|U|1407
6ZXD|1|2|U|1408
6ZXD|1|2|A|1409
*
6ZXD|1|2|U|1432
6ZXD|1|2|A|1438
6ZXD|1|2|A|1439
6ZXD|1|2|C|1440

Current chains

Chain 2

pre-18S ribosomal RNA

Nearby chains

Chain Q

40S ribosomal protein S16

Chain U

40S ribosomal protein S20