IL_6ZXD_089

3D structure

PDB id

6ZXD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a late human pre-40S ribosomal subunit - State F1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CC*GCG

Length

5 nucleotides

Bulged bases

6ZXD|1|2|C|1783

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZXD_089 not in the Motif Atlas

Geometric match to IL_5TBW_002

Geometric discrepancy: 0.3807

The information below is about IL_5TBW_002

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_61258.13

Basepair signature

cWW-L-cWW

Number of instances in this motif group

40

Unit IDs

6ZXD|1|2|C|1750
6ZXD|1|2|C|1751
*
6ZXD|1|2|G|1782
6ZXD|1|2|C|1783
6ZXD|1|2|G|1784

Current chains

Chain 2

pre-18S ribosomal RNA

Nearby chains