IL_6ZXE_054

3D structure

PDB id

6ZXE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a late human pre-40S ribosomal subunit - State F2

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGAAG*CGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZXE_054 not in the Motif Atlas

Geometric match to IL_5J7L_037

Geometric discrepancy: 0.0953

The information below is about IL_5J7L_037

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.7

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

6ZXE|1|2|C|1047
6ZXE|1|2|G|1048
6ZXE|1|2|A|1049
6ZXE|1|2|A|1050
6ZXE|1|2|G|1051
*
6ZXE|1|2|C|1067
6ZXE|1|2|G|1068
6ZXE|1|2|U|1069
6ZXE|1|2|A|1070
6ZXE|1|2|G|1071

Current chains

Chain 2

pre-18S ribosomal RNA

Nearby chains

Chain O

40S ribosomal protein S14

Chain z

Serine/threonine-protein kinase RIO1