IL_6ZXE_076

3D structure

PDB id

6ZXE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a late human pre-40S ribosomal subunit - State F2

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUGCCUACC*GUAACC

Length

15 nucleotides

Bulged bases

6ZXE|1|2|A|1580, 6ZXE|1|2|C|1581

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZXE|1|2|G|1550
6ZXE|1|2|U|1551
6ZXE|1|2|G|1552
6ZXE|1|2|C|1553
6ZXE|1|2|C|1554
6ZXE|1|2|U|1555
6ZXE|1|2|A|1556
6ZXE|1|2|C|1557
6ZXE|1|2|C|1558
*
6ZXE|1|2|G|1577
6ZXE|1|2|U|1578
6ZXE|1|2|A|1579
6ZXE|1|2|A|1580
6ZXE|1|2|C|1581
6ZXE|1|2|C|1582

Current chains

Chain 2

pre-18S ribosomal RNA

Nearby chains

Chain D

40S ribosomal protein S3

Chain K

40S ribosomal protein S10

Chain U

40S ribosomal protein S20

Chain d

40S ribosomal protein S29