IL_6ZXE_094

3D structure

PDB id

6ZXE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a late human pre-40S ribosomal subunit - State F2

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GCUCAGCGUGUGCCUACC*GUAACCCGUUGAACCC

Length

34 nucleotides

Bulged bases

6ZXE|1|2|A|1580, 6ZXE|1|2|C|1581, 6ZXE|1|2|U|1585, 6ZXE|1|2|G|1587

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZXE|1|2|G|1541
6ZXE|1|2|C|1542
6ZXE|1|2|U|1543
6ZXE|1|2|C|1544
6ZXE|1|2|A|1545
6ZXE|1|2|G|1546
6ZXE|1|2|C|1547
6ZXE|1|2|G|1548
6ZXE|1|2|U|1549
6ZXE|1|2|G|1550
6ZXE|1|2|U|1551
6ZXE|1|2|G|1552
6ZXE|1|2|C|1553
6ZXE|1|2|C|1554
6ZXE|1|2|U|1555
6ZXE|1|2|A|1556
6ZXE|1|2|C|1557
6ZXE|1|2|C|1558
*
6ZXE|1|2|G|1577
6ZXE|1|2|U|1578
6ZXE|1|2|A|1579
6ZXE|1|2|A|1580
6ZXE|1|2|C|1581
6ZXE|1|2|C|1582
6ZXE|1|2|C|1583
6ZXE|1|2|G|1584
6ZXE|1|2|U|1585
6ZXE|1|2|U|1586
6ZXE|1|2|G|1587
6ZXE|1|2|A|1588
6ZXE|1|2|A|1589
6ZXE|1|2|C|1590
6ZXE|1|2|C|1591
6ZXE|1|2|C|1592

Current chains

Chain 2

pre-18S ribosomal RNA

Nearby chains

Chain D

40S ribosomal protein S3

Chain F

40S ribosomal protein S5

Chain K

40S ribosomal protein S10

Chain Q

40S ribosomal protein S16

Chain T

40S ribosomal protein S19

Chain U

40S ribosomal protein S20

Chain Z

40S ribosomal protein S25

Chain d

40S ribosomal protein S29