IL_6ZXF_037

3D structure

PDB id

6ZXF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a late human pre-40S ribosomal subunit - State G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GUUAAAA*UC

Length

9 nucleotides

Bulged bases

6ZXF|1|2|A|668

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZXF_037 not in the Motif Atlas

Geometric match to IL_4LFB_022

Geometric discrepancy: 0.1797

The information below is about IL_4LFB_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_20847.1

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

5

Unit IDs

6ZXF|1|2|G|665
6ZXF|1|2|U|666
6ZXF|1|2|U|667
6ZXF|1|2|A|668
6ZXF|1|2|A|669
6ZXF|1|2|A|670
6ZXF|1|2|A|671
*
6ZXF|1|2|U|1161
6ZXF|1|2|C|1162

Current chains

Chain 2

pre-18S ribosomal RNA

Nearby chains

Chain X

40S ribosomal protein S23