IL_6ZXG_008

3D structure

PDB id

6ZXG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a late human pre-40S ribosomal subunit - State H1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CAG*C(OMU)G

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZXG_008 not in the Motif Atlas

Geometric match to IL_7A0S_020

Geometric discrepancy: 0.1377

The information below is about IL_7A0S_020

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

6ZXG|1|2|C|106
6ZXG|1|2|A|107
6ZXG|1|2|G|108
*
6ZXG|1|2|C|353
6ZXG|1|2|OMU|354
6ZXG|1|2|G|355

Current chains

Chain 2

pre-18S ribosomal RNA

Nearby chains

Chain I

40S ribosomal protein S8

Chain L

40S ribosomal protein S11

Chain X

40S ribosomal protein S23