IL_6ZXG_070

3D structure

PDB id

6ZXG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a late human pre-40S ribosomal subunit - State H1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

G(OMG)U*GCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZXG_070 not in the Motif Atlas

Geometric match to IL_2ZNI_001

Geometric discrepancy: 0.1473

The information below is about IL_2ZNI_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

6ZXG|1|2|G|1327
6ZXG|1|2|OMG|1328
6ZXG|1|2|U|1329
*
6ZXG|1|2|G|1500
6ZXG|1|2|C|1501
6ZXG|1|2|C|1502

Current chains

Chain 2

pre-18S ribosomal RNA

Nearby chains

Chain D

40S ribosomal protein S3

Chain P

40S ribosomal protein S15

Chain j

Probable RNA-binding protein EIF1AD