IL_6ZXG_084

3D structure

PDB id

6ZXG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a late human pre-40S ribosomal subunit - State H1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

6ZXG|1|2|C|1701, 6ZXG|1|2|A|1835

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZXG_084 not in the Motif Atlas

Homologous match to IL_4V88_463

Geometric discrepancy: 0.0946

The information below is about IL_4V88_463

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

5

Unit IDs

6ZXG|1|2|C|1700
6ZXG|1|2|C|1701
6ZXG|1|2|G|1702
*
6ZXG|1|2|C|1833
6ZXG|1|2|A|1834
6ZXG|1|2|A|1835
6ZXG|1|2|G|1836

Current chains

Chain 2

pre-18S ribosomal RNA

Nearby chains

Chain h

40S ribosomal protein S26

Chain z

Serine/threonine-protein kinase RIO1