IL_6ZXG_090

3D structure

PDB id

6ZXG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a late human pre-40S ribosomal subunit - State H1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UUGG*CUA

Length

7 nucleotides

Bulged bases

6ZXG|1|2|U|1721

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZXG_090 not in the Motif Atlas

Geometric match to IL_3ICQ_003

Geometric discrepancy: 0.3012

The information below is about IL_3ICQ_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_70707.3

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

70

Unit IDs

6ZXG|1|2|U|1720
6ZXG|1|2|U|1721
6ZXG|1|2|G|1722
6ZXG|1|2|G|1723
*
6ZXG|1|2|C|1811
6ZXG|1|2|U|1812
6ZXG|1|2|A|1813

Current chains

Chain 2

pre-18S ribosomal RNA

Nearby chains

Chain X

40S ribosomal protein S23

Chain k

Leucine-rich repeat-containing protein 47