IL_6ZXG_101

3D structure

PDB id

6ZXG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a late human pre-40S ribosomal subunit - State H1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GGAUAAC*GCUAA(OMU)A(OMC)

Length

15 nucleotides

Bulged bases

6ZXG|1|2|OMU|172

QA status

Modified nucleotides: OMU, OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZXG_101 not in the Motif Atlas

Homologous match to IL_8C3A_402

Geometric discrepancy: 0.0848

The information below is about IL_8C3A_402

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80604.4

Basepair signature

cWW-L-R-tWH-tWH-tHW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

6ZXG|1|2|G|145
6ZXG|1|2|G|146
6ZXG|1|2|A|147
6ZXG|1|2|U|148
6ZXG|1|2|A|149
6ZXG|1|2|A|150
6ZXG|1|2|C|151
*
6ZXG|1|2|G|167
6ZXG|1|2|C|168
6ZXG|1|2|U|169
6ZXG|1|2|A|170
6ZXG|1|2|A|171
6ZXG|1|2|OMU|172
6ZXG|1|2|A|173
6ZXG|1|2|OMC|174

Current chains

Chain 2

pre-18S ribosomal RNA

Nearby chains

Chain G

40S ribosomal protein S6

Chain Y

40S ribosomal protein S24