IL_6ZXH_030

3D structure

PDB id

6ZXH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a late human pre-40S ribosomal subunit - State H2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GAC*GGCC

Length

7 nucleotides

Bulged bases

6ZXH|1|2|G|547, 6ZXH|1|2|C|548

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZXH_030 not in the Motif Atlas

Geometric match to IL_2ET8_001

Geometric discrepancy: 0.2703

The information below is about IL_2ET8_001

Detailed Annotation

Stack and bulge

Broad Annotation

Stack and bulge

Motif group

IL_53541.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

6ZXH|1|2|G|535
6ZXH|1|2|A|536
6ZXH|1|2|C|537
*
6ZXH|1|2|G|546
6ZXH|1|2|G|547
6ZXH|1|2|C|548
6ZXH|1|2|C|549

Current chains

Chain 2

pre-18S ribosomal RNA

Nearby chains

Chain e

40S ribosomal protein S30