IL_6ZXH_065

3D structure

PDB id

6ZXH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a late human pre-40S ribosomal subunit - State H2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CC(PSU)G*CGCG

Length

8 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZXH_065 not in the Motif Atlas

Geometric match to IL_3WBM_002

Geometric discrepancy: 0.25

The information below is about IL_3WBM_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

6ZXH|1|2|C|1230
6ZXH|1|2|C|1231
6ZXH|1|2|PSU|1232
6ZXH|1|2|G|1233
*
6ZXH|1|2|C|1525
6ZXH|1|2|G|1526
6ZXH|1|2|C|1527
6ZXH|1|2|G|1528

Current chains

Chain 2

pre-18S ribosomal RNA

Nearby chains

Chain Q

40S ribosomal protein S16

Chain S

40S ribosomal protein S18

Chain T

40S ribosomal protein S19

Chain z

Serine/threonine-protein kinase RIO1