IL_6ZXH_087
3D structure
- PDB id
- 6ZXH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a late human pre-40S ribosomal subunit - State H2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CGCU*AAAAG
- Length
- 9 nucleotides
- Bulged bases
- 6ZXH|1|2|A|1825
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZXH_087 not in the Motif Atlas
- Geometric match to IL_5J7L_033
- Geometric discrepancy: 0.2827
- The information below is about IL_5J7L_033
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_85033.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 35
Unit IDs
6ZXH|1|2|C|1708
6ZXH|1|2|G|1709
6ZXH|1|2|C|1710
6ZXH|1|2|U|1711
*
6ZXH|1|2|A|1822
6ZXH|1|2|A|1823
6ZXH|1|2|A|1824
6ZXH|1|2|A|1825
6ZXH|1|2|G|1826
Current chains
- Chain 2
- pre-18S ribosomal RNA
Nearby chains
- Chain P
- 40S ribosomal protein S15
- Chain X
- 40S ribosomal protein S23
- Chain e
- 40S ribosomal protein S30
- Chain j
- Probable RNA-binding protein EIF1AD
- Chain z
- Serine/threonine-protein kinase RIO1
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