IL_6ZXH_089

3D structure

PDB id

6ZXH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a late human pre-40S ribosomal subunit - State H2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CGAU*AGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZXH_089 not in the Motif Atlas

Homologous match to IL_4V88_468

Geometric discrepancy: 0.3082

The information below is about IL_4V88_468

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

6ZXH|1|2|C|1717
6ZXH|1|2|G|1718
6ZXH|1|2|A|1719
6ZXH|1|2|U|1720
*
6ZXH|1|2|A|1813
6ZXH|1|2|G|1814
6ZXH|1|2|A|1815
6ZXH|1|2|G|1816

Current chains

Chain 2

pre-18S ribosomal RNA

Nearby chains

Chain X

40S ribosomal protein S23