IL_6ZXH_107

3D structure

PDB id

6ZXH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a late human pre-40S ribosomal subunit - State H2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GAC*GUUU

Length

7 nucleotides

Bulged bases

6ZXH|1|2|U|1016

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZXH_107 not in the Motif Atlas

Homologous match to IL_8C3A_510

Geometric discrepancy: 0.0933

The information below is about IL_8C3A_510

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10167.3

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

49

Unit IDs

6ZXH|1|2|G|925
6ZXH|1|2|A|926
6ZXH|1|2|C|927
*
6ZXH|1|2|G|1014
6ZXH|1|2|U|1015
6ZXH|1|2|U|1016
6ZXH|1|2|U|1017

Current chains

Chain 2

pre-18S ribosomal RNA

Nearby chains

Chain N

40S ribosomal protein S13

Chain b

40S ribosomal protein S27